{ "_id": "6ac75cfdde46216d5edcee93", "Package": "kmc", "Type": "Package", "Title": "Kaplan-Meier Estimator with Constraints for Right Censored Data\n-- a Recursive Computational Algorithm", "Version": "0.4-3", "Date": "2024-09-19", "Authors@R": "c(person(\"Yifan\", \"Yang\", role = c(\"aut\", \"cre\",\"cph\"),\nemail = \"yfyang.86@hotmail.com\"),\nperson(\"Mai\", \"Zhou\", role = \"aut\"))", "Maintainer": "Yifan Yang ", "Description": "Given constraints for right censored data, we use a\nrecursive computational algorithm to calculate the the\n\"constrained\" Kaplan-Meier estimator. The constraint is assumed\ngiven in linear estimating equations or mean functions. We also\nillustrate how this leads to the empirical likelihood ratio\ntest with right censored data and accelerated failure time\nmodel with given coefficients. EM algorithm from emplik package\nis used to get the initial value. The properties and\nperformance of the EM algorithm is discussed in Mai Zhou and\nYifan Yang (2015) and Mai Zhou\nand Yifan Yang (2017) . More\napplications could be found in Mai Zhou (2015) .", "URL": "https://github.com/yfyang86/kmc/", "License": "LGPL-3", "NeedsCompilation": "yes", "Encoding": "UTF-8", "Config/testthat/edition": "3", "Repository": "https://yfyang86.r-universe.dev", "Date/Publication": "2024-09-19 07:06:15 UTC", "RemoteUrl": "https://github.com/yfyang86/kmc", "RemoteRef": "HEAD", "RemoteSha": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "Packaged": { "Date": "2026-10-08 08:53:20 UTC", "User": "root" }, "Author": "Yifan Yang [aut, cre, cph],\nMai Zhou [aut]", "_user": "yfyang86", "_type": "src", "_file": "kmc_0.4-3.tar.gz", "_fileid": "https://r2.ropensci.org/0b48d31c7666fda16b5bebc31214735519ff5c741177589cacc2a1793d2385e0", "_filesize": 765228, "_sha256": "0b48d31c7666fda16b5bebc31214735519ff5c741177589cacc2a1793d2385e0", "_expires": "2027-01-16T09:06:03.000Z", "_created": "2026-10-08T08:53:20.000Z", "_published": "2026-10-08T09:06:05.514Z", "_buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113230178618, "time": 101, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "11538603940" }, { "job": 113230178673, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "11539305297" }, { "job": 113230178700, "time": 104, "config": "linux-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11538354084" }, { "job": 113230178715, "time": 126, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11539130422" }, { "job": 113230178875, "time": 159, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "11539372102" }, { "job": 113230178914, "time": 234, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "11539215936" }, { "job": 113230178656, "time": 179, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11538104799" }, { "job": 113230178576, "time": 463, "config": "macos-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11538778471" }, { "job": 113229179774, "time": 159, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11538114986" }, { "job": 113230178807, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11538727989" }, { "job": 113230178645, "time": 308, "config": "windows-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "11537989982" }, { "job": 113230178778, "time": 155, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "11539395166" }, { "job": 113230178766, "time": 117, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "11537899489" }, { "job": 113230178696, "time": 338, "config": "windows-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11538354763" }, { "job": 113230178731, "time": 127, "config": "windows-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11538762499" } ], "_upstream": "https://github.com/yfyang86/kmc", "_commit": { "id": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "author": "Yifan ", "committer": "Yifan ", "message": "Update the Readme file.\n", "time": 1726729575 }, "_maintainer": { "name": "Yifan Yang", "email": "yfyang.86@hotmail.com" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "compiler", "role": "Depends" }, { "package": "rootSolve", "role": "Depends" }, { "package": "emplik", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "survival", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "tidyr", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "yfyang86", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "yfyang86", "count": 50, "uuid": 1158522 }, { "user": "nicole-chen", "count": 1, "uuid": 7142515 } ], "_userbio": { "uuid": 1158522, "type": "user", "name": "Yifan", "followers": 32 }, "_downloads": { "count": 388, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kmc" }, "_mentions": 8, "_devurl": "https://github.com/yfyang86/kmc", "_searchresults": 4, "_topics": [ "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/kmc.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/yfyang86/kmc", "_realowner": "yfyang86", "_cranurl": true, "_releases": [ { "version": "0.1-2", "date": "2013-12-25" }, { "version": "0.2-2", "date": "2015-11-23" }, { "version": "0.2-3", "date": "2019-04-24" }, { "version": "0.2-4", "date": "2020-03-16" }, { "version": "0.4-2", "date": "2022-11-22" } ], "_exports": [ "kmc.bjtest", "kmc.solve", "kmc.solvelite" ], "_help": [ { "page": "check_G_mat", "title": "Check the contraints of KMC", "topics": [ "check_G_mat" ] }, { "page": "kmc.bjtest", "title": "Calculate the NPMLE with constriants for accelerated failure time model with given coefficients.", "topics": [ "kmc.bjtest" ] }, { "page": "kmc.clean", "title": "Perform Data Clean for the kmc Algorithm", "topics": [ "kmc.clean" ] }, { "page": "kmc.solve", "title": "Calculate NPMLE with constriants for right censored data", "topics": [ "kmc.solve" ] }, { "page": "kmc.solvelite", "title": "Calculate NPMLE with constriants for right censored data", "topics": [ "kmc.solve" ] }, { "page": "plotkmc", "title": "Plot the contour plot of log-likelihood around the H0 (dim=2).", "topics": [ "plotkmc2D" ] } ], "_readme": "https://github.com/yfyang86/kmc/raw/HEAD/README.md", "_rundeps": [ "emplik", "lattice", "MASS", "Matrix", "MatrixModels", "quantreg", "Rcpp", "rootSolve", "SparseM", "survival" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 3.9030899869919438, "_indexed": true, "_nocasepkg": "kmc", "_universes": [ "yfyang86" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4-3", "date": "2026-10-08T08:54:59.000Z", "distro": "resolute", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/dfc59ef04a525b72f7fc46eb9289dcbf33d07abb3e8c6594a3627983692927e3", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.7.0", "os": "linux", "version": "0.4-3", "date": "2026-10-08T08:55:14.000Z", "distro": "resolute", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/3d2284aa46c1970f82d76f8211d629be1fb4418f2010c2cf25126eb4311eb10a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "linux", "version": "0.4-3", "date": "2026-10-08T08:55:03.000Z", "distro": "resolute", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/379f6a6fa5005a8a7fdfcc531156b059f518238bdab62ac9688b975450c08f41", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "linux", "version": "0.4-3", "date": "2026-10-08T08:55:50.000Z", "distro": "resolute", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/d75a1d695ff3b6cf171d6a26207c224cc26b4de27f20fed5fe58c9215a568271", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.5.3", "os": "mac", "version": "0.4-3", "date": "2026-10-08T09:05:16.000Z", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/fef97dd4ad02f0dc5d3232c83f215a2a7c9e310d1a4f7176ca1de409a36e89f7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.5.3", "os": "mac", "version": "0.4-3", "date": "2026-10-08T08:57:50.000Z", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/0cf1cb31ec8acf8be2028edd4350dbba459c7da27aa113bb2b9a923322d7a13f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "mac", "version": "0.4-3", "date": "2026-10-08T08:56:27.000Z", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/22f95334136d3618bf04fc956915405650e070928ef1e7ec72c1b4ebbb742b88", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "mac", "version": "0.4-3", "date": "2026-10-08T08:59:37.000Z", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/f568d9936fd3e52f66cf285a135cbc43e1905c1768bc9a699c023286fd03a431", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.0", "os": "wasm", "version": "0.4-3", "date": "2026-10-08T08:55:09.000Z", "arch": "emscripten", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/e84067f0b625c818c0c1673b9e83f963ce70c512b6fb342f9462f71f56a9e7af", "status": "success", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.7.0", "os": "win", "version": "0.4-3", "date": "2026-10-08T08:58:03.000Z", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/3d88b8fce56c0671b24a266077ed06cebd023582df311aa345bfe0f5637e1555", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.7.0", "os": "win", "version": "0.4-3", "date": "2026-10-08T08:54:33.000Z", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/daad22581af1fb9060735ec1d5ebb696e70b5095c2bb11c9871f8942be07d266", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.5.3", "os": "win", "version": "0.4-3", "date": "2026-10-08T08:54:36.000Z", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/cb3f7ac78e5306b26fc9dd1ebee67a1398434e9f11b3473e0a737c9ea069458e", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "win", "version": "0.4-3", "date": "2026-10-08T08:58:34.000Z", "arch": "aarch64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/aa051187509ad63b96df0381d91e7e61131edb008d09301c66248d553e6bb2b1", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" }, { "r": "4.6.1", "os": "win", "version": "0.4-3", "date": "2026-10-08T08:54:44.000Z", "arch": "x86_64", "commit": "308cb8e5b1934630cc7442a0f4cc88e60930b6da", "fileid": "https://r2.ropensci.org/f1b4b2295e13ceef9d6618fe20c5a8bfd5502bdaa67c03dc3bfce0d102f836c4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/yfyang86/actions/runs/37752547810" } ] }